eLife

Distinct allosteric remodeling of HIV-1 Env dynamics on virions by gp41-directed antibodies reveals two modes of neutralization

HIV-1 envelope glycoprotein (Env), a gp120–gp41 trimer, undergoes coordinated conformational changes that drive membrane fusion and allow immune evasion by transiently concealing ...
IEEE

A conjugate gradient method for solving unconstrained optimization problems

Abstract: For the conjugate gradient method to solve the unconstrained optimization problem, given a new interval method to obtain the direction parameters, and a new conjugate gradient algorithm is ...
IEEE

Sensor Network Localization via Riemannian Conjugate Gradient and Rank Reduction

Abstract: This paper addresses the Sensor Network Localization (SNL) problem using received signal strength. The SNL is formulated as an Euclidean Distance Matrix Completion (EDMC) problem under the ...
GitHub

gradient_in_euclidean.m

% GRADIENT_IN_EUCLIDEAN Plots gradient values as a scatter plot. % h = GRADIENT_IN_EUCLIDEAN(gradients) plots a scatter plot of n-by-2 or % n-by-3 matrix gradients where n is the number of datapoints.
GitHub

plot_gradient_analysis.py

" python gradient_analysis/plot_gradient_analysis.py --wandb-path entity/project/run_id\n" " python gradient_analysis/plot_gradient_analysis.py --wandb-path entity ...